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- 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data. Academic Article
- A Look at Galvanic Distortion in the Tasman Sea and the Juan de Fuca Plate Academic Article
- A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10. Academic Article
- A biomechanical model for analysis of muscle force, power output and lower jaw motion in fishes. Academic Article
- A boundary layer flow with multiple equilibria Academic Article
- A comment on two models of the remigration interval in marine turtles. Academic Article
- A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory. Academic Article
- A data mining approach to dinoflagellate clustering according to sterol composition: correlations with evolutionary history. Academic Article
- A distance-field based automatic neuron tracing method. Academic Article
- A general description of a gravity current front propagating in a two-layer stratified fluid Academic Article
- A hidden species-area curve Academic Article
- A laboratory demonstration of solitons using a vertical watery conduit in syrup Academic Article
- A laboratory study of localized boundary mixing in a rotating stratified fluid Academic Article
- A mechanism of formation of multiple zonal jets in the oceans Academic Article
- A method for unbiased estimation of population abundance along curvy margins Academic Article
- A model for internal bores in continuous stratification Academic Article
- A new open ocean, hybrid coordinate primitive equation model Academic Article
- A note on the evolution of gamete dimorphism. Academic Article
- A note on the role of the buoyancy layer in a rotating stratified fluid Academic Article
- A note on the statistical properties of animal locations. Academic Article
- A simple laboratory model for the oceanic circulation Academic Article
- A simple population model with qualitatively uncertain dynamics Academic Article
- A simulation study of a time lag population model. Academic Article
- A unified linear theory of homogeneous and stratified rotating fluids Academic Article
- Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake. Academic Article
- American Journal of Physics Journal
- An empirical bayes approach to monitoring water quality Academic Article
- An experimental and numerical study of the secular spin-up of a thermally stratified rotating fluid Academic Article
- An experimental study on thermal circulation driven by horizontal differential heating Academic Article
- An overlooked aspect of the wind-driven oceanic circulation Academic Article
- Analysis of geologic materials using an automated x-ray fluorescence system Academic Article
- Analytic reconstruction of a two-dimensional velocity field from an observed diffusive scalar Academic Article
- AnnTools: a comprehensive and versatile annotation toolkit for genomic variants. Academic Article
- Atomic Force Microscopy to Study Mechanics of Living Mitotic Mammalian Cells Academic Article
- Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos. Academic Article
- Axially symmetric motion of a stratified, rotating fluid in a spherical annulus of narrow gap Academic Article
- BMC Bioinformatics Journal
- Baroclinic instability of time-dependent currents Academic Article
- Bulletin of Mathematical Biology Journal
- Buoyant gravity currents along a sloping bottom in a rotating fluid Academic Article
- CORRECTION Academic Article
- Canadian Journal of Physics Journal
- Cellular automaton models for competition in patchy environments: facilitation, inhibition, and tolerance. Academic Article
- Cellular convection in a chamber with a warm surface raft Academic Article
- Chaotic advection in a steady, three-dimensional, Ekman-driven eddy Academic Article
- Circulation around a thin zonal island Academic Article
- Climate system modeling using a domain and task decomposition message-passing approach Academic Article
- Coiled-coil proteins facilitated the functional expansion of the centrosome. Academic Article
- Comparison of fix computation and filtering for autonomous acoustic navigation Academic Article
- Competition during colonization vs competition after colonization in disturbed environments: A metapopulation approach Academic Article
- Computer Physics Communications Journal
- Computer applications in the biosciences : CABIOS Bioinformatics Journal
- Constraints on lithospheric mantle and crustal anisotropy in the NoMelt area from an analysis of long-period seafloor magnetotelluric data Academic Article
- Correction [to “Nitrite photolysis as a source of free radicals in productive surface waters”] Academic Article
- Critical conditions and composite Froude numbers for layered flow with transverse variations in velocity Academic Article
- Cyclone and anticyclone formation in a rotating stratified fluid over a sloping bottom Academic Article
- Da Vinci’s observations of soaring birds Academic Article
- Decay and return of internal solitary waves with rotation Academic Article
- Density dependence of light scattering from nitrogen: Permanent and collisional effects and their interferences Academic Article
- Density-dependent vital rates and their population dynamic consequences. Academic Article
- Diffusion dépolarisée Rayleigh par des molécules anisotropes: calcul analytique des contributions propres, collisionnelles et croisées pour divers potentiels Academic Article
- Diffusive boundary layers over varying topography Academic Article
- Dimensional analysis of models and data sets Academic Article
- Discussion Academic Article
- Dislocation glide observed in bimodal convection Academic Article
- Dislocations in convection and the onset of chaos Academic Article
- Domain formation in membranes caused by lipid wetting of protein. Academic Article
- Dynamics of vorticity fronts Academic Article
- EPL (Europhysics Letters) Journal
- Electric and Magnetic Field Galvanic Distortion Decomposition of BC87 Data. Academic Article
- Electromagnetic induction by ocean currents and the conductivity of the oceanic lithosphere. Academic Article
- Empirical bayes analysis of sequencing-based transcriptional profiling without replicates. Academic Article
- Energy intensities, interdependence, and value in ecological systems: A linear programming approach Academic Article
- Entrainment and mixing dynamics of surface-stress-driven stratified flow in a cylinder Academic Article
- Entrainment in two coalescing axisymmetric turbulent plumes Academic Article
- Entrainment ranges of forced phase oscillators. Academic Article
- Environmental Fluid Mechanics Journal
- Environmental Heterogeneity and Biological Pattern in a Chaotic Predator–prey System Academic Article
- Environmental and Ecological Statistics Journal
- Environmetrics Journal
- Erratum to: Integrodifference equations, Allee effects, and invasions Academic Article
- Erratum: “Cellular convection in a chamber with a warm surface raft” [Phys. Fluids 23, 104103 (2011)] Academic Article
- Estimating species number under an inconvenient abundance model Academic Article
- Evaluation of the interaction of cyclin-dependent kinase 5 with activator p25 and with p25-derived inhibitor CIP. Academic Article
- Experimental study of the effect of rotation on nonlinear internal waves Academic Article
- Filament turnover tunes both force generation and dissipation to control long-range flows in a model actomyosin cortex. Academic Article
- Finger puzzles Academic Article
- Finite-amplitude evolution of two-layer geostrophic vortices Academic Article
- Flow-induced channelization in a porous medium Academic Article
- Fluid flow in loops driven by freshwater and heat fluxes Academic Article
- Forensic Science International: Genetics Journal
- Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. Academic Article
- Fused Regression for Multi-source Gene Regulatory Network Inference. Academic Article
- Genomics, Proteomics & Bioinformatics Journal
- Gradients and modulation of K(+) channels optimize temporal accuracy in networks of auditory neurons. Academic Article
- Gravity current propagation up a valley Academic Article
- Gravity currents and internal waves in a stratified fluid Academic Article
- Gravity currents from a dam-break in a rotating channel Academic Article
- Growth and division of active droplets provides a model for protocells Academic Article
- Human-generated sound and marine mammals Academic Article
- Hydraulic adjustment to an obstacle in a rotating channel Academic Article
- Hydraulic control by a wide weir in a rotating fluid Academic Article
- Inertial Taylor columns on a beta plane Academic Article
- Inferring extinction from a sighting record. Academic Article
- Inferring extinction in a declining population Academic Article
- Integrodifference equations, Allee effects, and invasions. Academic Article
- Intercomparison of one-dimensional detecting methods of unveiling the global ocean striations Academic Article
- Internal hydraulic jumps in two-layer flows with upstream shear Academic Article
- Internal solitary wave breaking and run-up on a uniform slope Academic Article
- Internal solitary wave generation by tidal flow over topography Academic Article
- International Journal of Data Mining and Bioinformatics Journal
- International Journal of Modern Physics E Journal
- International Journal of Systems Science Journal
- Interpretations of climate-change data Academic Article
- Isotope fractionation in secondary ion mass spectrometry Academic Article
- Japanese Journal of Applied Physics Journal
- Journal de Physique 4 Journal
- Journal of Agricultural, Biological, and Environmental Statistics Journal
- Journal of Applied Physics Journal
- Journal of Computational Biology Journal
- Journal of Computational Physics Journal
- Journal of Fluid Mechanics Journal
- Journal of Geomagnetism and Geoelectricity Earth, Planets and Space Journal
- Journal of Mathematical Biology Journal
- Journal of Physics A: Mathematical and Theoretical Journal of Physics A: Mathematical and Theoretical Journal
- Journal of Theoretical Biology Journal
- Laboratory experiments and simulations for solitary internal waves with trapped cores Academic Article
- Laboratory experiments on two coalescing axisymmetric turbulent plumes in a rotating fluid Academic Article
- Laboratory observations of a gravity current on a sloping bottom: the generation of shelf waves Academic Article
- Lateral tension increases the line tension between two domains in a lipid bilayer membrane. Academic Article
- Lessons on doing science from my father, Gerry Brown Academic Article
- Linear Algebra and its Applications Journal
- Linear and nonlinear barotropic instability of geostrophic shear layers Academic Article
- Linear stability analysis of salt fingers with surface evaporation or warming Academic Article
- Linear theory of rotating stratified fluid motions Academic Article
- Linear theory of the circulation of a stratified ocean Academic Article
- Liposome adhesion generates traction stress Academic Article
- Local baroclinic instability of flow over variable topography Academic Article
- Lock-exchange gravity currents over rough bottoms Conference Paper
- Long wavelength spin dynamics in La0.53Ca0.47MnO3 Conference Paper
- Long-range forces affecting equilibrium inertial focusing behavior in straight high aspect ratio microfluidic channels. Academic Article
- Mathematical Biosciences Journal
- Mathematics and Computers in Simulation Journal
- Measuring biological diversity Academic Article
- Microbiome-based body fluid identification of samples exposed to indoor conditions. Academic Article
- Microswimmers – From Single Particle Motion to Collective Behavior Academic Article
- Mixing and entrainment in hydraulically driven stratified sill flows Academic Article
- Mixing in a density-driven current flowing down a slope in a rotating fluid Academic Article
- Model-based traction force microscopy reveals differential tension in cellular actin bundles. Academic Article
- Monte Carlo simulation of complex spectra for opacity calculations. Academic Article
- Multi-scale approaches for high-speed imaging and analysis of large neural populations. Academic Article
- Multistate flow devices for geophysical fluid dynamics and climate Academic Article
- Nature Physics Journal
- Nd–Fe–B permanent magnets (thick films) produced by a vacuum-plasma-spraying process Academic Article
- Nonlinear Rossby adjustment in a channel Academic Article
- Nonlinear model predictions of bispectra of shoaling surface gravity waves Academic Article
- Numerical calculations of two-dimensional large Prandtl number convection in a box Academic Article
- Numerical simulation of two coalescing turbulent forced plumes in linearly stratified fluids Academic Article
- Observation and characterization of the vestige of the jamming transition in a thermal three-dimensional system. Academic Article
- Observations of bispectra of shoaling surface gravity waves Academic Article
- Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the Regional Ocean Modeling System Academic Article
- On inertial flow over topography. Part 1. Semigeostrophic adjustment to an obstacle Academic Article
- On inertial flow over topography. Part 2. Rotating-channel flow near the critical speed Academic Article
- On interfacial solitary waves over slowly varying topography Academic Article
- On latency of multiple zonal jets in the oceans Academic Article
- On long nonlinear internal waves over slope-shelf topography Academic Article
- On multiple states in single-layer flows Academic Article
- On spatially growing baroclinic waves in the ocean Academic Article
- On the Estimation of Dispersal Kernels from Individual Mark-Recapture Data Academic Article
- On the consistency of the historic temperature record with greenhouse warming Academic Article
- On the dynamics of finite-amplitude baroclinic waves as a function of supercriticality Academic Article
- On the forced flow of salty water in a loop Academic Article
- On the interpretation of energy and energy fluxes of nonlinear internal waves: an example from Massachusetts Bay Academic Article
- On the propagation of gravity currents over and through a submerged array of circular cylinders Academic Article
- On the stability of ocean overflows Academic Article
- On the steady motions produced by a stable stratification in a rapidly rotating fluid Academic Article
- Optimal Size at Maturity in Size-Structured Populations Academic Article
- Optimal life histories and age-specific costs of reproduction: two extensions. Academic Article
- Optimal life histories and the age-specific costs of reproduction. Academic Article
- Optimal transient growth in thin-interface internal solitary waves Academic Article
- Orientation distribution of fibres in a channel flow of fibre suspension Academic Article
- PLoS Computational Biology conference postcard from PSB 2011. Academic Article
- PLoS computational biology Journal
- Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. Academic Article
- Parametric instability in oscillatory shear flows Academic Article
- Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Academic Article
- Physical Review A - Atomic, Molecular, and Optical Physics Journal
- Physical Review E - Statistical, Nonlinear, and Soft Matter Physics Journal
- Physics of Fluids Journal
- Physics today Journal
- Propagation of a finite-amplitude potential vorticity front along the wall of a stratified fluid Academic Article
- Proteins: Structure, Function and Bioinformatics Journal
- Quantifying the effects of dynamical noise on the predictability of a simple ecosystem model Academic Article
- Quantifying the effects of elastic collisions and non-covalent binding on glutamate receptor trafficking in the post-synaptic density. Academic Article
- Quantifying vertical mixing in estuaries Academic Article
- Racial tracking, fixing details, speaking out Academic Article
- Random differential equations as models of ecosystems— II. initial condition and parameter specifications in terms of maximum entropy distributions Academic Article
- Random differential equations as models of ecosystems— III. bayesian inference for parameters Academic Article
- Rapid gravitational adjustment of horizontal shear flows Academic Article
- Red, white and blue: environmental variance spectra and coexistence in metapopulations Academic Article
- Robust Processing of Magnetotelluric Data from the Auroral Zone Academic Article
- Saddle-point approximations, integrodifference equations, and invasions. Academic Article
- Seismic and aseismic fault slip before and during the 2011 off the Pacific coast of Tohoku Earthquake Academic Article
- Self-organization in biological systems with multiple cellular contacts. Academic Article
- Sensitivity analysis of discrete Markov chains via matrix calculus Academic Article
- Sensitivity analysis of reactive ecological dynamics. Academic Article
- Separation of a boundary jet in a rotating fluid Academic Article
- Sequencing Data Discovery with MetaSeek. Academic Article
- Shallow-Water Acoustics Academic Article
- Shoaling gravity waves: comparisons between field observations, linear theory, and a nonlinear model Academic Article
- Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. Academic Article
- Simple model of cytoskeletal fluctuations. Academic Article
- Simulation of atomic transition arrays for opacity calculations. Academic Article
- Solar variability does not explain late-20th-century warming Academic Article
- Some model-based inference about global warming Academic Article
- Sperm as microswimmers – navigation and sensing at the physical limit Academic Article
- Stability of a buoyancy-driven coastal current at the shelf break Academic Article
- Statistically interacting quasiparticles in Ising chains Academic Article
- Stress fluctuations and motion of cytoskeletal-bound markers. Academic Article
- Surveying a subsea lava flow using the Autonomous Benthic Explorer (ABE) Academic Article
- Swimming performance, resonance and shape evolution in heaving flexible panels Academic Article
- Synaptic competition in developmental binocular plasticity. Academic Article
- Ten simple rules to consider regarding preprint submission. Academic Article
- The Heton, an Elementary Interaction Between Discrete Baroclinic Geostrophic Vortices, and Its Implications Concerning Eddy Heat-Flow Academic Article
- The characteristics of salt fingers in a variety of fluid systems, including stellar interiors, liquid metals, oceans, and magmas Academic Article
- The deflection of a baroclinic jet by a wall in a rotating fluid Academic Article
- The effect of dependence on estimating sample coverage Academic Article
- The effect of intrinsic muscular nonlinearities on the energetics of locomotion in a computational model of an anguilliform swimmer. Academic Article
- The effects of interaction compartments on stability for competitive systems. Academic Article
- The effects of rotation on salt fingers Academic Article
- The evolution of territory size-some ESS models. Academic Article
- The intrusion of a density current along the coast of a rotating fluid Academic Article
- The nonlinear dynamics of baroclinic wave ensembles Academic Article
- The propagation of dislocations in Rayleigh-Bénard rolls and bimodal flow Academic Article
- The role of curvature feedback in the energetics and dynamics of lamprey swimming: A closed-loop model. Academic Article
- The similarity solution for turbulent mixing of two-layer stratified fluid Academic Article
- The spin up of a stratified fluid Academic Article
- The subcritical collapse of predator populations in discrete-time predator-prey models. Academic Article
- The wall jet in a rotating fluid Academic Article
- The ‘sliced-cylinder’ laboratory model of the wind-driven ocean circulation. Part 1. Steady forcing and topographic Rossby wave instability Academic Article
- The ‘sliced-cylinder’ laboratory model of the wind-driven ocean circulation. Part 2. Oscillatory forcing and Rossby wave resonance Academic Article
- Thermally driven motions in a rotating stratified fluid: theory and experiment Academic Article
- Thermals with background rotation and stratification Academic Article
- Thermo-viscous fingering of flow in a thin gap: a model of magma flow in dikes and fissures Academic Article
- Time-dependent isolated anomalies in zonal flows Academic Article
- Topology of gap junction networks in C. elegans. Academic Article
- Transcritical two-layer flow over topography Academic Article
- Transient dynamics and pattern formation: reactivity is necessary for Turing instabilities. Academic Article
- Turbulent mixing in stratified fluids: layer formation and energetics Academic Article
- Turbulent mixing of two-layer stratified fluid Academic Article
- Turbulent transport in the outer region of rough-wall open-channel flows: the contribution of large coherent shear stress structures (LC3S) Academic Article
- Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. Academic Article
- Using the 2011 M w 9.0 off the Pacific coast of Tohoku Earthquake to test the Coulomb stress triggering hypothesis and to calculate faults brought closer to failure Academic Article
- VAMPS: a website for visualization and analysis of microbial population structures. Academic Article
- Volatile (F and Cl) concentrations in Iwate olivine-hosted melt inclusions indicating low-temperature subduction Academic Article
- Vortex motion in the ocean: In situ visualization of jellyfish swimming and feeding flows Academic Article
- Watching a roundworm develop with a sheet of light Academic Article
- WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Academic Article
- Wuli Xuebao/Acta Physica Sinica Chinese Physics B Chinese Physics Journal
- X-Ray Spectrometry Journal
- X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Academic Article
- uBioRSS: tracking taxonomic literature using RSS. Academic Article